Selected publications
Berg K, Lodha M, Delazer I, Bartosik K, Garcia YC, Hennig T, Wolf E, Dölken L, Lusser A, Prusty BK, Erhard F (2024)
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data.
Nucleic Acids Research 52(7):e35
(link)
Rummel T, Sakellaridi L, Erhard F (2023)
grandR: a comprehensive package for nucleotide conversion RNA-seq data analysis.
Nature Communications14(1):3559
(link)
Schmidt N, Ganskih S, Wei Y, Gabel A, Zielinski S, Keshishian H, Lareau CA, Zimmermann L, Makroczyova J, Pearce C, Krey K, Hennig T, Stegmaier S, Moyon L, Horlacher M, Werner S, Aydin J, Olguin-Nava M, Potabattula R, Kibe A, Dölken L, Smyth RP, Caliskan N, Marsico A, Krempl C, Bodem J, Pichlmair A, Carr SA, Chlanda P, Erhard F, Munschauer M. (2023)
SND1 binds SARS-CoV-2 negative-sense RNA and promotes viral RNA synthesis through NSP9.
Cell, 186(22)
(link)
Erhard F*, Saliba A-E*, Lusser A, Toussaint C, Hennig T, Prusty BK, Kirschenbaum D, Abadie K, Miska EA, Friedel CC, Amit I, Micura R, and Dölken L* (2022)
Time-resolved single-cell RNA-seq using metabolic RNA labelling
Nature Reviews Methods Primers, 2(1)
(link)
Narain A, Bhandare P, Adhikari B, Backes S, Eilers M, Dölken L, Schlosser A, Erhard F*, Baluapuri A*, and Wolf E* (2021)
Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
Molecular Cell, S1097-2765(21)00496-2
(link)
Erhard F, Dölken L, Schilling B, and Schlosser A (2020)
Identification of the Cryptic HLA-I Immunopeptidome
Cancer Immunology Research, 8(8), 1018–1026.
(link)
Whisnant AW *, Jürges C *, Hennig T, Wyler E, Prusty B, Rutkowski AJ, L’hernault A, Göbel M, Döring K, Menegatti J, Antrobus R, Matheson NJ, Künzig FWH, Mastrobuoni G, Bielow C, Kempa S, Chunguang L, Dandekar T, Zimmer R, Landthaler M, Grässer F, Lehner PJ, Friedel CC, Erhard F*, and Dölken, L* (2019)
Integrative functional genomics decodes herpes simplex virus 1
Nature Communications 11(1), 1–14
(link)
Erhard F, Baptista MA, Krammer T, Hennig T, Lange M, Arampatzi P, Jürges C, Theis FJ, Saliba A-E, and Dölken L (2019)
scSLAM-seq reveals core features of transcription dynamics in single cells
Nature 571, pages 419–423
(link)
Jürges C, Dölken L, and Erhard F (2018)
Dissecting newly transcribed and old RNA using GRAND-SLAM
Bioinformatics 34, i218–i226
(link)
Erhard F, Halenius A, Zimmermann C, L’Hernault A, Kowalewski DJ, Weekes MP, Stevanovic S, Zimmer R, and Dölken L (2018)
Improved Ribo-seq enables identification of cryptic translation events
Nature Methods 15, 363–366
(link)